generateRunSaveTest_constructionModelesLassoMLE = function(n=200, p=15, m=10, k=3, mini=5,
maxi=10, gamma=1.0, glambda=list(0.0,0.01,0.02,0.03,0.05,0.1,0.2,0.3,0.5,0.7,0.85,0.99))
{
- testFolder = "data/"
- dir.create(testFolder, showWarnings=FALSE, mode="0755")
-
- require(valse)
- params = valse:::basic_Init_Parameters(n, p, m, k)
- A2 = array(0, dim=c(p, m+1, L))
+ tau = 1e-6;
+ seuil = 1e-15;
+ L = length(glambda);
A1 = array(0, dim=c(p, m+1, L))
+ A2 = array(0, dim=c(p, m+1, L))
for (i in 1:L)
{
- A2[,1,i] = seq_len(p)
- A2[,2,i] = seq_len(5)
A1[,1,i] = seq_len(p)
- A1[,2,i] = seq_len(5)
+ A1[1:5,2,i] = seq_len(5)
+ A2[,1,i] = seq_len(p)
+ A2[1:5,2,i] = seq_len(5)
}
- io = generateIOdefault(n, p, m, k)
+ require(valse)
+ params = valse:::basicInitParameters(n, p, m, k)
+ xy = valse:::generateXYdefault(n, p, m, k)
+ testFolder = "data/"
+ dir.create(testFolder, showWarnings=FALSE, mode="0755")
#save inputs
write.table(as.double(params$phiInit), paste(testFolder,"phiInit",sep=""),
row.names=F, col.names=F)
row.names=F, col.names=F)
write.table(as.double(gamma), paste(testFolder,"gamma",sep=""),
row.names=F, col.names=F)
- write.table(as.double(lambda), paste(testFolder,"lambda",sep=""),
+ write.table(as.double(glambda), paste(testFolder,"glambda",sep=""),
row.names=F, col.names=F)
- write.table(as.double(io$X), paste(testFolder,"X",sep=""),
+ write.table(as.double(xy$X), paste(testFolder,"X",sep=""),
row.names=F, col.names=F)
- write.table(as.double(io$Y), paste(testFolder,"Y",sep=""),
+ write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(seuil), paste(testFolder,"seuil",sep=""),
row.names=F, col.names=F)
write.table(as.double(tau), paste(testFolder,"tau",sep=""),
row.names=F, col.names=F)
- write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""),
+ write.table(as.double(A1), paste(testFolder,"A1",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(A2), paste(testFolder,"A2",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.integer(c(n,p,m,k,L)), paste(testFolder,"dimensions",sep=""),
row.names=F, col.names=F)
res = constructionModelesLassoMLE(
params$phiInit,params$rhoInit,params$piInit,params$gamInit,
- mini,maxi,gamma,glambda,io$X,io$Y,seuil,tau,A1,A2)
+ mini,maxi,gamma,glambda,xy$X,xy$Y,seuil,tau,A1,A2)
#save output
write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F, col.names=F)