-generateRunSaveTest_EMGrank = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0, rank = c(1,2,4)){
- testFolder = "data/"
- dir.create(testFolder, showWarnings=FALSE, mode="0755")
- delimiter = " "
-
+source("EMGrank.R")
+
+generateRunSaveTest_EMGrank = function(n=200, p=15, m=10, k=3, mini=5, maxi=10, gamma=1.0,
+ rank = c(1,2,4))
+{
tau = 1e-6
-
pi = rep(1.0/k, k)
- rho = array(0, dim=c(m,m,k))
-
- for(i in 1:k){
+ rho = array(dim=c(m,m,k))
+ for(i in 1:k)
rho[,,i] = diag(1,m)
- }
+ require(valse)
+ xy = valse:::generateXYdefault(n, p, m, k)
- #Generate X and Y
- generateIOdef = generateIOdefault(n, p, m, k)
-
+ testFolder = "../data/"
+ dir.create(testFolder, showWarnings=FALSE, mode="0755")
#save inputs
- write.table(paste(testFolder,"rho",sep=""), rho, sep=delimiter)
- write.table(paste(testFolder,"pi",sep=""), pi, sep=delimiter)
- write.table(paste(testFolder,"mini",sep=""), mini, sep=delimiter)
- write.table(paste(testFolder,"maxi",sep=""), maxi, sep=delimiter)
- write.table(paste(testFolder,"X",sep=""), generateIOdef$X sep=delimiter)
- write.table(paste(testFolder,"Y",sep=""), generateIOdef$Y, sep=delimiter)
- write.table(paste(testFolder,"tau",sep=""), tau, sep=delimiter)
- write.table(paste(testFolder,"rank",sep=""), rank, sep=delimiter)
- write.table(paste(testFolder,"dimensions",sep=""), c(n,p,m,k), sep=delimiter)
-
- EMG_rank = EMG(pi,rho,mini,maxi,X,Y,tau,rank)
-
+ write.table(as.double(rho), paste(testFolder,"rho",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(pi), paste(testFolder,"pi",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.integer(mini), paste(testFolder,"mini",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.integer(maxi), paste(testFolder,"maxi",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(xy$X), paste(testFolder,"X",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(xy$Y), paste(testFolder,"Y",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.double(tau), paste(testFolder,"tau",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.integer(rank), paste(testFolder,"rank",sep=""),
+ row.names=F, col.names=F)
+ write.table(as.integer(c(n,p,m,k)), paste(testFolder,"dimensions",sep=""),
+ row.names=F, col.names=F)
+
+ res = EMGrank(pi,rho,mini,maxi,xy$X,xy$Y,tau,rank)
+
#save output
- write.table(paste(testFolder,"phi",sep=""), EMG_rank$phi, sep=delimiter)
- write.table(paste(testFolder,"LLF",sep=""), EMG_rank$LLF, sep=delimiter)
+ write.table(as.double(res$phi), paste(testFolder,"phi",sep=""), row.names=F,col.names=F)
+ write.table(as.double(res$LLF), paste(testFolder,"LLF",sep=""), row.names=F,col.names=F)
}