Commit | Line | Data |
---|---|---|
a65907cc | 1 | context("Check that computeFilaments behaves as expected") |
1e20780e | 2 | |
44a9990b | 3 | #MOCK data; NOTE: could be in inst/testdata as well |
6d97bfec | 4 | getDataTest = function(n, shift) |
a65907cc BA |
5 | { |
6 | x = seq(0,10,0.1) | |
7 | L = length(x) | |
8 | s1 = cos(x) | |
9 | s2 = sin(x) | |
10 | s3 = c( s1[1:(L%/%2)] , s2[(L%/%2+1):L] ) | |
11 | #sum((s1-s2)^2) == 97.59381 | |
12 | #sum((s1-s3)^2) == 57.03051 | |
13 | #sum((s2-s3)^2) == 40.5633 | |
14 | s = list( s1, s2, s3 ) | |
a65907cc BA |
15 | series = list() |
16 | for (i in seq_len(n)) | |
1e20780e | 17 | { |
44a9990b | 18 | index = (i-1) %% 3 + 1 #map 1->1, 2->2, 3->3, 4->1, ..., 149->2, 150->3 |
a65907cc | 19 | level = mean(s[[index]]) |
44a9990b | 20 | serie = s[[index]] - level + rnorm(L,sd=0.01) |
a65907cc BA |
21 | # 10 series with NAs for index 2 |
22 | if (index == 2 && i >= 60 && i<= 90) | |
23 | serie[sample(seq_len(L),1)] = NA | |
24 | series[[i]] = list("level"=level,"serie"=serie) #no need for more | |
1e20780e | 25 | } |
6d97bfec BA |
26 | if (shift) |
27 | { | |
28 | # Simulate shift at origin when predict_at > 0 | |
29 | series[2:(n+1)] = series[1:n] | |
30 | series[[1]] = list("level"=0, "serie"=s[[1]][1:(L%/%2)]) | |
31 | } | |
32 | new("Data", data=series) | |
33 | } | |
34 | ||
44a9990b | 35 | test_that("output is as expected on simulated series, predict_at == 0", |
6d97bfec | 36 | { |
44a9990b | 37 | data = getDataTest(150, shift=FALSE) |
a65907cc | 38 | |
44a9990b BA |
39 | # index 143 : serie type 2 |
40 | f = computeFilaments(data, 143, limit=60, plot=FALSE) | |
41 | # Expected output: 23 series of type 3 (closer), then 50-3-10 series of type 2, then index 143 | |
42 | expect_identical(length(f$indices), as.integer(61)) #61 because result also contain "today" | |
43 | expect_identical(length(f$colors), as.integer(61)) | |
44 | for (i in 1:23) | |
6d97bfec | 45 | { |
44a9990b BA |
46 | expect_equal((f$indices[i]-1) %% 3 + 1, 3) |
47 | expect_match(f$colors[i], f$colors[1]) | |
6d97bfec | 48 | } |
44a9990b | 49 | for (i in 24:60) |
6d97bfec | 50 | { |
44a9990b BA |
51 | expect_equal((f$indices[i]-1) %% 3 + 1, 2) |
52 | expect_match(f$colors[i], f$colors[24]) | |
6d97bfec | 53 | } |
44a9990b BA |
54 | expect_equal(f$indices[61], 143) |
55 | expect_match(f$colors[61], "#FF0000") #special color: current day in red | |
56 | expect_match(f$colors[1], "#E*") | |
57 | expect_match(f$colors[24], "#1*") | |
6d97bfec BA |
58 | }) |
59 | ||
44a9990b | 60 | test_that("output is as expected on simulated series, predict_at > 0", |
6d97bfec | 61 | { |
44a9990b | 62 | data = getDataTest(150, shift=TRUE) |
6d97bfec | 63 | |
44a9990b BA |
64 | # index 142 : serie type 3 |
65 | f = computeFilaments(data, 142, limit=70, plot=FALSE) | |
66 | # Expected output: 24 series of type 2 (closer) then 50-4 series of type 3, then 142 | |
67 | expect_identical(length(f$indices), as.integer(71)) | |
68 | expect_identical(length(f$colors), as.integer(71)) | |
69 | expect_true(all(f$indices >= 2)) #no type-1 neighbors | |
70 | for (i in 1:24) | |
6d97bfec | 71 | { |
44a9990b BA |
72 | # -1 + -1 because of the initial shift |
73 | expect_equal((f$indices[i]-2) %% 3 + 1, 2) | |
6d97bfec BA |
74 | expect_match(f$colors[i], f$colors[1]) |
75 | } | |
44a9990b | 76 | for (i in 25:70) |
6d97bfec | 77 | { |
44a9990b BA |
78 | expect_equal((f$indices[i]-2) %% 3 + 1, 3) |
79 | expect_match(f$colors[i], f$colors[25]) | |
6d97bfec | 80 | } |
44a9990b BA |
81 | expect_equal(f$indices[71], 142) |
82 | expect_match(f$colors[71], "#FF0000") | |
83 | expect_match(f$colors[1], "#E*") | |
84 | expect_match(f$colors[25], "#1*") | |
6d97bfec BA |
85 | }) |
86 | ||
87 | test_that("output is as expected on simulated series", | |
88 | { | |
44a9990b | 89 | data = getDataTest(150, shift=TRUE) |
6d97bfec | 90 | |
44a9990b BA |
91 | # index 143 : serie type 1 |
92 | f = computeFilaments(data, 143, limit=60, plot=FALSE) | |
93 | # Expected output: 23 series of type 3 (closer), then 50-10-3 series of type 1, then 143 | |
94 | # NOTE: -10 because only past days with no-NAs tomorrow => exclude type 1 in [60,90[ | |
95 | expect_identical(length(f$indices), as.integer(61)) | |
96 | expect_identical(length(f$colors), as.integer(61)) | |
97 | expect_true(all(f$indices >= 2)) #first_day should be 2 | |
98 | for (i in 1:23) | |
6d97bfec | 99 | { |
44a9990b | 100 | expect_equal(( (f$indices[i]-2) %% 3 ) + 1, 3) |
6d97bfec BA |
101 | expect_match(f$colors[i], f$colors[1]) |
102 | } | |
44a9990b | 103 | for (i in 24:60) |
6d97bfec | 104 | { |
44a9990b BA |
105 | expect_equal(( (f$indices[i]-2) %% 3 ) + 1, 1) |
106 | expect_match(f$colors[i], f$colors[24]) | |
6d97bfec | 107 | } |
44a9990b BA |
108 | expect_equal(f$indices[61], 143) |
109 | expect_match(f$colors[61], "#FF0000") | |
110 | expect_match(f$colors[1], "#E*") | |
111 | expect_match(f$colors[24], "#1*") | |
1e20780e | 112 | }) |